An open-source alignment method for multichannel infinite-conjugate microscopes using a ray transfer matrix analysis model

Multichannel, infinite-conjugate optical systems easily allow implementation of multiple image paths and imaging modes into a single microscope. Traditional optical alignment methods which rely on additional hardware are not always simple to implement, particularly in compact open-source microscope designs. We present here an alignment algorithm and process to position the lenses and cameras in a microscope using only image magnification measurements. We show that the resulting positioning accuracy is comparable to the axial resolution of the microscope. Ray transfer matrix analysis is used to model the imaging paths when the optics are both correctly and incorrectly aligned. This is used to derive the corresponding image magnifications. We can then extract information about the lens positions using simple image-based measurements to determine whether there is misalignment of the objective lens to sample distance (working distance) and with what magnitude and direction the objective lens needs to be adjusted. Using the M4All open-source 3D printable microscope system in combination with the OpenFlexure microscope, we validate the alignment method and highlight its usability. We provide the model and an example implementation of the algorithm as an open-source Jupyter Notebook

Adapting a Strategy of Cultural Inclusion in a Pandemic: A Case Study in Agile Adaptation

The master’s programmes in Communication Design at The Glasgow School of Art (GSA) maintains a cohort of approximately 45-50 students of typically more than twenty nationalities. With such a culturally diverse cohort of students from a variety of prior learning experiences, promoting student cohesion is an important aspect in the student’s learning experience with studio-based learning playing a key role. I presented my paper on “Cultural Diversity in a Masters Programme in Illustration: A Case Study in Interna- tionalisation” at Confia in 2019 which presented the strategies the team had employed. During the Covid-19 Pandemic of 2020 and 2021 the teaching team at GSA had to adapt these strategies to ensure adherence to government guidelines which restricted and at points prohibited studio-based teaching. We developed an agile teaching model and a hybrid approach with online teaching combined with limited access for students to the studio and work- shops, to continue to deliver the positive strategies developed to promote cultural inclusion and diversity. In this paper I will reflect on the effectiveness of those adaptations and consider lessons learned in the process

Retrieval of Volcanic and Man-Made Stratospheric Aerosols from Orbital Polarimetric Measurements

Stratospheric aerosols that are caused by a major volcanic eruption can serve as a valuable test of global climate models, as well as severely complicate tropospheric-aerosol monitoring from space. In either case, it is highly desirable to have accurate global information on the optical thickness, size, and composition of volcanic aerosols. We report sensitivity study results, which analyze the implications of making precise multi-angle photopolarimetric measurements in a 1.378-m spectral channel residing within a strong water-vapor absorption band. We demonstrate that, under favorable conditions, such measurements would enable near-perfect retrievals of the optical thickness, effective radius, and refractive index of stratospheric aerosols. Besides enabling accurate retrievals of volcanic aerosols, such measurements can also be used to monitor man-made particulates injected in the stratosphere for geoengineering purposes

Adjoint Methods for Adjusting Three-Dimensional Atmosphere and Surface Properties to Fit Multi-Angle Multi-Pixel Polarimetric Measurements

This paper derives an efficient procedure for using the three-dimensional (3D) vector radiative transfer equation (VRTE) to adjust atmosphere and surface properties and improve their fit with multi-angle/multi-pixel radiometric and polarimetric measurements of scattered sunlight. The proposed adjoint method uses the 3D VRTE to compute the measurement misfit function and the adjoint 3D VRTE to compute its gradient with respect to all unknown parameters. In the remote sensing problems of interest, the scalar-valued misfit function quantifies agreement with data as a function of atmosphere and surface properties, and its gradient guides the search through this parameter space. Remote sensing of the atmosphere and surface in a three-dimensional region may require thousands of unknown parameters and millions of data points. Many approaches would require calls to the 3D VRTE solver in proportion to the number of unknown parameters or measurements. To avoid this issue of scale, we focus on computing the gradient of the misfit function as an alternative to the Jacobian of the measurement operator. The resulting adjoint method provides a way to adjust 3D atmosphere and surface properties with only two calls to the 3D VRTE solver for each spectral channel, regardless of the number of retrieval parameters, measurement view angles or pixels. This gives a procedure for adjusting atmosphere and surface parameters that will scale to the large problems of 3D remote sensing. For certain types of multi-angle/multi-pixel polarimetric measurements, this encourages the development of a new class of three-dimensional retrieval algorithms with more flexible parametrizations of spatial heterogeneity, less reliance on data screening procedures, and improved coverage in terms of the resolved physical processes in the Earths atmosphere